Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Gigartinales
Family
  • Gigartinaceae

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References

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Annotations Explorer: Chondrus crispus UGPM

Overview

Assembly Details

Assembly name Chondrus crispus UGPM
AlgaeDB ID Chon_cris_UGPM
Source 1KP
Source ID UGPM
NCBI Txid 2769
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 20,323,968
Assembly BUSCO score C: 67.4 (S: 59.6 D: 7.8) F: 11.0 M: 21.6
Protein BUSCO score C: 46.3 (S: 42.4 D: 3.9) F: 11.0 M: 42.7
GC content 53.81
Gene count 4,265
Contigs 26,096
Contig N50 2,117
Contig L50 2,861
Scaffolds 25,526
Scaffold N50 2,170
Scaffold L50 2,794

Biosample Details

Biosample SAMEA104171180
Tissue blades

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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