Taxonomy:

Phylum

Rhodophyta

Subphylum

Cyanidiophytina

Class

Cyanidiophyceae

Order

Cyanidiales

Family

Cyanidioschyzonaceae

Related assemblies

Cyanidium caldarium DBV 063 E5

References

Articles

Nelson D.R. et al, 2021. ScienceDirect

See also:

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Annotations Explorer: Cyanidium caldarium UTEX2393

Overview

Assembly Details

Assembly name	Cyanidium caldarium UTEX2393 Warnings Warning: Identity This assembly has been putatively identified as being a Galdieria assembly. References Park S.I. et al 2023. https://doi.org/10.1111/jpy.13322 McKinnie L.J, Cummins S. & Zhao M. 2024. https://doi.org/10.3390/md22010003
AlgaeDB ID	Cyan_cald_UTEX2393
Strain/Intraspecific name	UTEX2393
Source	NCBI
Source ID	GCA_019693505.1
NCBI Txid	2771
Bioproject	PRJNA517804
Year	2021
Assembly type	Genome
Assembly level	Scaffold
Sequencing technology	PacBio
Assembly method	ABySS v.2.1.5

Assembly Statistics

Assembly Length (bp)	11,413,374
Assembly BUSCO score	C: 55.3 (S: 54.9 D: 0.4) F: 9.0 M: 35.7
Protein BUSCO score	C: 59.6 (S: 59.6 D: 0.0) F: 12.2 M: 28.2
Assembly coverage	100.0x
GC content	40.32
Gene count	3,958
Contigs	8,994
Contig N50	13,324
Scaffolds	8,964
Scaffold N50	13,838

Biosample Details

Biosample	SAMN10845581
Location	USA: California
Tissue	cells
Further information	https://utex.org/products/utex-2393

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au

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