Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Ceramiales
Family
  • Rhodomelaceae
Subfamily
  • Alsidieae

References

Articles

See also:

Downloads BLAST search View dataset information

Annotations Explorer: Digenea simplex OPJ-A18

Overview

Assembly Details

Assembly name Digenea simplex OPJ-A18
AlgaeDB ID Dig_simp_OPJ-A18
Strain/Intraspecific name OPJ-A18
Source NCBI
Source ID GCA_004798425.1
NCBI Txid 945030
Bioproject PRJNA509898
Year 2019
Assembly type Hologenome
Assembly level Contig
Sequencing technology Oxford Nanopore PromethION; Illumina NovaSeq
Assembly method minimap2+miniasm; pilon

Assembly Statistics

Assembly Length (bp) 299,321,041
Assembly BUSCO score C: 74.5 (S: 72.5 D: 2.0) F: 5.1 M: 20.4
Protein BUSCO score C: 73.4 (S: 71.0 D: 2.4) F: 7.5 M: 19.1
Assembly coverage 30.0x
GC content 43.34
Gene count 49,327
Contigs 8,254
Contig N50 57,705

Biosample Details

Biosample SAMN10485948
Location Japan: Okinawa Prefecture, Onna









Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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