Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Gigartinales
Family
  • Dumontiaceae

References

Articles

See also:

Compare all annotations Downloads BLAST search View dataset information

Annotations Explorer: Dumontia simplex IEHF

Overview

Assembly Details

Assembly name Dumontia simplex IEHF
AlgaeDB ID Dum_simp_IEHF
Source 1KP
Source ID IEHF
NCBI Txid 142491
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 18,414,637
Assembly BUSCO score C: 61.6 (S: 55.7 D: 5.9) F: 14.9 M: 23.5
Protein BUSCO score C: 41.2 (S: 36.9 D: 4.3) F: 15.3 M: 43.5
GC content 52.83
Gene count 4,238
Contigs 19,120
Contig N50 2,284
Contig L50 2,442
Scaffolds 18,665
Scaffold N50 2,343
Scaffold L50 2,380

Biosample Details

Biosample SAMEA104171178
Tissue branches

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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