Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Gigartinales
Family
  • Solieriaceae

Related assemblies


References

Articles

See also:

Compare all annotations Downloads BLAST search View dataset information

Annotations Explorer: Kappaphycus alvarezii IHJY

Overview

Assembly Details

Assembly name Kappaphycus alvarezii IHJY
AlgaeDB ID Kap_alv_IHJY
Source 1KP
Source ID IHJY
NCBI Txid 38544
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 26,295,304
Assembly BUSCO score C: 51.7 (S: 32.5 D: 19.2) F: 22.0 M: 26.3
Protein BUSCO score C: 42.3 (S: 28.2 D: 14.1) F: 18.4 M: 39.3
GC content 52.07
Gene count 5,480
Contigs 56,412
Contig N50 1,040
Contig L50 7,068
Scaffolds 54,852
Scaffold N50 1,125
Scaffold L50 6,680

Biosample Details

Biosample SAMEA104171185
Tissue branches

Search annotations by type

Search annotations by description

Search Enzyme annotations

Search KEGG annotations

Assembly summary graphs










Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






To top