Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Bangiophyceae
Subclass
  • Bangiophycidae
Order
  • Bangiales
Family
  • Bangiaceae

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Annotations Explorer: Neopyropia yezoensis RZ

Overview

Assembly Details

Assembly name Neopyropia yezoensis RZ
AlgaeDB ID Pyro_yez_RZ
Strain/Intraspecific name RZ
Source NCBI
Source ID GCA_009829735.1
NCBI Txid 2788
Bioproject PRJNA589917
Year 2020
Assembly type Genome
Assembly level Chromosome
Sequencing technology Illumina HiSeq, PacBio RS, Hi-C
Assembly method HGAP v. RS_HGAP_Assembly.3; PBJelly2 v. 2017-12-21; 3d-dna pipeline v. 2018-03-09; SSPACE v. 2017-12-21; FinisherSC v. 2017-12-21

Assembly Statistics

Assembly Length (bp) 107,590,730
Assembly BUSCO score C: 31.8 (S: 31.0 D: 0.8) F: 9.4 M: 58.8
Protein BUSCO score C: 46.3 (S: 45.1 D: 1.2) F: 13.3 M: 40.4
Assembly coverage 100.0x
GC content 64.92
Gene count 8,236
Contigs 999
Contig N50 202,496
Contig L50 160
Scaffolds 28
Scaffold N50 34,332,347
Scaffold L50 2

Biosample Details

Biosample SAMN13316713
Location China: Rizhao
Tissue gametophyte
Growth stage/Age gametophyte

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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