Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Proteorhodophytina
Class
  • Compsopogonophyceae
Order
  • Rhodochaetales
Family
  • Rhodochaetaceae

References

Articles

See also:

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Annotations Explorer: Rhodochaete parvula JJZR

Overview

Assembly Details

Assembly name Rhodochaete parvula JJZR
AlgaeDB ID Rhod_parv_JJZR
Source 1KP
Source ID JJZR
NCBI Txid 110510
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 26,263,391
Assembly BUSCO score C: 73.7 (S: 62.7 D: 11.0) F: 12.2 M: 14.1
Protein BUSCO score C: 43.1 (S: 37.6 D: 5.5) F: 9.4 M: 47.5
GC content 57.76
Gene count 3,850
Contigs 38,272
Contig N50 2,147
Contig L50 3,303
Scaffolds 37,894
Scaffold N50 2,193
Scaffold L50 3,236

Biosample Details

Biosample SAMEA104171171
Tissue algal cells

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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