Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Proteorhodophytina
Class
  • Rhodellophyceae
Order
  • Glaucosphaerales
Family
  • Glaucosphaeraceae

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References

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Annotations Explorer: Rhodella violacea RTLC

Overview

Assembly Details

Assembly name Rhodella violacea RTLC
AlgaeDB ID Rhod_viol_RTLC
Source 1KP
Source ID RTLC
NCBI Txid 2801
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 17,961,962
Assembly BUSCO score C: 52.5 (S: 48.6 D: 3.9) F: 22.7 M: 24.8
Protein BUSCO score C: 43.6 (S: 41.2 D: 2.4) F: 15.3 M: 41.1
GC content 60.43
Gene count 4,475
Contigs 28,979
Contig N50 1,255
Contig L50 4,021
Scaffolds 28,449
Scaffold N50 1,291
Scaffold L50 3,931

Biosample Details

Biosample SAMEA104171195
Tissue algal cells

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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