Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Proteorhodophytina
Class
  • Porphyrideophyceae
Order
  • Porphyridiales
Family
  • Porphyridiaceae

References

Articles

See also:

Compare all annotations Downloads BLAST search View dataset information

Annotations Explorer: Timspurckia oligopyrenoides MMETSP1172

Overview

Note: This assembly has alternate annotation profiles published.

Assembly Details

Assembly name Timspurckia oligopyrenoides MMETSP1172
AlgaeDB ID Tim_oli_MMETSP1172-McKinnie2023
Strain/Intraspecific name CCMP3278
Source MMETSP_Vlierberghe
Source ID MMETSP1172
NCBI Txid 708627
Bioproject PRJNA248394
Year 2021
Assembly type Transcriptome
Assembly level None
Sequencing technology Illumina
Assembly method BPA v1.0, BPA v2.0

Assembly Statistics

Assembly Length (bp) 14,646,350
Assembly BUSCO score C: 50.2 (S: 46.7 D: 3.5) F: 24.7 M: 25.1
Protein BUSCO score C: 45.9 (S: 43.5 D: 2.4) F: 20.8 M: 33.3
GC content 42.19
Gene count 8,492
Contigs 13,901
Contig N50 1,574

Biosample Details

Biosample SAMN02740143
Location Indian Ocean
Broad context Marine
Further information https://www.moore.org/docs/default-source/Grantee-Resources/mmetsp-master-accession-key-7-7-2014.xlsx?sfvrsn=a8b8940d_0

Search annotations by type

Search annotations by description

Search Enzyme annotations

Search KEGG annotations

Assembly summary graphs










Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






To top