Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Bonnemaisoniales
Family
  • Bonnemaisoniaceae

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References

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Annotations Explorer: Asparagopsis taxiformis Cali

Overview

Assembly Details

Assembly name Asparagopsis taxiformis Cali
AlgaeDB ID A_taxi_Cali
Strain/Intraspecific name Cali
Source NCBI
Source ID GCA_018397975.1
NCBI Txid 260499
Bioproject PRJNA596236
Year 2021
Assembly type Genome
Assembly level Scaffold
Sequencing technology Illumina NovaSeq
Assembly method metaspades v.3.13

Assembly Statistics

Assembly Length (bp) 75,200,346
Assembly BUSCO score C: 77.6 (S: 74.9 D: 2.7) F: 4.7 M: 17.7
Protein BUSCO score C: 76.8 (S: 68.2 D: 8.6) F: 5.9 M: 17.3
Assembly coverage 4.0x
GC content 46.7
Gene count 9,896
Contigs 12,615
Contig N50 7,579
Contig L50 2,528
Scaffolds 10,024
Scaffold N50 8,939
Scaffold L50 2,138

Biosample Details

Biosample SAMN13615772
Location USA: San Diego, California

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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