Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Bonnemaisoniales
Family
  • Bonnemaisoniaceae

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References

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Annotations Explorer: Asparagopsis taxiformis Guam

Overview

Assembly Details

Assembly name Asparagopsis taxiformis Guam
AlgaeDB ID A_taxi_Guam
Strain/Intraspecific name Guam
Source NCBI
Source ID GCA_018397955.1
NCBI Txid 260499
Bioproject PRJNA596236
Year 2021
Assembly type Genome
Assembly level Scaffold
Sequencing technology Illumina NovaSeq
Assembly method metaspades v.3.13

Assembly Statistics

Assembly Length (bp) 46,695,008
Assembly BUSCO score C: 77.2 (S: 67.8 D: 9.4) F: 5.9 M: 16.9
Protein BUSCO score C: 76.0 (S: 72.9 D: 3.1) F: 6.3 M: 17.7
Assembly coverage 4.0x
GC content 47.7
Gene count 17,577
Contigs 6,404
Contig N50 10,700
Contig L50 574
Scaffolds 5,651
Scaffold N50 11,264
Scaffold L50 543

Biosample Details

Biosample SAMN13615734
Location Guam

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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