Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Gracilariales
Family
  • Gracilariaceae
Subfamily
  • Gracilarioideae
Subfamily
  • Gracilariopsidae

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References

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Annotations Explorer: Gracilariopsis lemaneiformis IKWM

Overview

Assembly Details

Assembly name Gracilariopsis lemaneiformis IKWM
AlgaeDB ID Grac_leman_IKWM
Source 1KP
Source ID IKWM
NCBI Txid 2782
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 24,604,651
Assembly BUSCO score C: 79.3 (S: 62.4 D: 16.9) F: 8.2 M: 12.5
Protein BUSCO score C: 51.0 (S: 43.9 D: 7.1) F: 9.4 M: 39.6
GC content 50.97
Gene count 4,765
Contigs 26,404
Contig N50 2,853
Contig L50 2,537
Scaffolds 25,880
Scaffold N50 2,920
Scaffold L50 2,484

Biosample Details

Biosample SAMEA104171189
Tissue branches

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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