Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Bangiophyceae
Subclass
  • Bangiophycidae
Order
  • Bangiales
Family
  • Bangiaceae

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Annotations Explorer: Porphyra umbilicalis 4086291

Overview

Assembly Details

Assembly name Porphyra umbilicalis 4086291
AlgaeDB ID Por_umb_4086291
Strain/Intraspecific name 4086291
Source NCBI
Source ID GCA_002049455.2
NCBI Txid 2786
Bioproject PRJNA234409
Year 2017
Assembly type Genome
Assembly level Scaffold
Sequencing technology PacBio
Assembly method FALCON v.2.0

Assembly Statistics

Assembly Length (bp) 87,888,981
Assembly BUSCO score C: 26.3 (S: 25.5 D: 0.8) F: 9.4 M: 64.3
Protein BUSCO score C: 44.0 (S: 42.4 D: 1.6) F: 14.5 M: 41.5
Assembly coverage 432.0x
GC content 65.7
Gene count 13,567
Contigs 2,257
Contig N50 171,716
Contig L50 151
Scaffolds 2,126
Scaffold N50 202,021
Scaffold L50 130

Biosample Details

Biosample SAMN00118171

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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