Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Bangiophyceae
Subclass
  • Bangiophycidae
Order
  • Bangiales
Family
  • Bangiaceae

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Annotations Explorer: Neoporphyra haitanensis PH40

Overview

Assembly Details

Assembly name Neoporphyra haitanensis PH40
AlgaeDB ID Porp_hait_PH40
Strain/Intraspecific name PH40
Source NCBI
Source ID GCA_008729055.1
NCBI Txid 1262161
Bioproject PRJNA503796
Year 2019
Assembly type Genome
Assembly level Scaffold
Sequencing technology PacBio RSII
Assembly method HGAP v.3

Assembly Statistics

Assembly Length (bp) 53,254,617
Assembly BUSCO score C: 27.9 (S: 26.7 D: 1.2) F: 9.0 M: 63.1
Protein BUSCO score C: 36.9 (S: 35.7 D: 1.2) F: 9.8 M: 53.3
Assembly coverage 100.0x
GC content 71.26
Gene count 5,689
Contigs 283
Contig N50 1,068,871
Contig L50 15
Scaffolds 194
Scaffold N50 5,758,810
Scaffold L50 4

Biosample Details

Biosample SAMN10373787
Location China: Nanri Island, Fujian
Tissue thallus
Sex Female

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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