Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Halymeniales
Family
  • Grateloupiaceae

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References

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Annotations Explorer: Grateloupia catenata PYDB

Overview

Assembly Details

Assembly name Grateloupia catenata PYDB
AlgaeDB ID Grat_cat_PYDB
Source 1KP
Source ID PYDB
NCBI Txid 118369
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 22,821,652
Assembly BUSCO score C: 74.6 (S: 67.1 D: 7.5) F: 9.0 M: 16.4
Protein BUSCO score C: 52.2 (S: 47.5 D: 4.7) F: 8.2 M: 39.6
GC content 49.07
Gene count 4,792
Contigs 28,828
Contig N50 2,158
Contig L50 3,226
Scaffolds 28,269
Scaffold N50 2,209
Scaffold L50 3,164

Biosample Details

Biosample SAMEA104171193
Tissue branches and blades

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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