Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Proteorhodophytina
Class
  • Porphyrideophyceae
Order
  • Porphyridiales
Family
  • Porphyridiaceae

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Annotations Explorer: Porphyridium purpureum CCMP1328

Overview

Assembly Details

Assembly name Porphyridium purpureum CCMP1328
AlgaeDB ID Por_purp_CCMP1328
Strain/Intraspecific name CCMP1328
Source NCBI
Source ID GCA_008690995.1
NCBI Txid 35688
Bioproject PRJNA560054
Year 2019
Assembly type Genome
Assembly level Contig
Sequencing technology Oxford Nanopore MinION
Assembly method MaSuRCA v.3.2.8

Assembly Statistics

Assembly Length (bp) 22,192,338
Assembly BUSCO score C: 71.0 (S: 68.6 D: 2.4) F: 7.5 M: 21.5
Protein BUSCO score C: 72.6 (S: 70.2 D: 2.4) F: 7.8 M: 19.6
Assembly coverage 45.0x
GC content 55.91
Gene count 9,898
Contigs 52
Contig N50 1,853,716
Contig L50 4

Biosample Details

Biosample SAMN12567248
Location USA: North Atlantic
Further information https://ncma.bigelow.org/CCMP1328

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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