Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Proteorhodophytina
Class
  • Porphyrideophyceae
Order
  • Porphyridiales
Family
  • Porphyridiaceae

Related assemblies


References

Articles

External Links


See also:

Downloads BLAST search View dataset information

Annotations Explorer: Porphyridium purpureum PVGP

Overview

Assembly Details

Assembly name Porphyridium purpureum PVGP
AlgaeDB ID Por_purp_PVGP
Source 1KP
Source ID PVGP
NCBI Txid 35688
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 11,975,335
Assembly BUSCO score C: 23.1 (S: 22.7 D: 0.4) F: 18.4 M: 58.5
Protein BUSCO score C: 20.8 (S: 20.4 D: 0.4) F: 15.3 M: 63.9
GC content 55.49
Gene count 3,117
Contigs 21,154
Contig N50 1,408
Contig L50 2,424
Scaffolds 20,561
Scaffold N50 1,483
Scaffold L50 2,330

Biosample Details

Biosample SAMEA104171169
Tissue algal cells

Search annotations by type

Annotation profile

Search annotations by description

Search Enzyme annotations

Search KEGG annotations











Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






To top