Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Proteorhodophytina
Class
  • Porphyrideophyceae
Order
  • Porphyridiales
Family
  • Porphyridiaceae

Related assemblies


References

Articles

See also:

Compare all annotations Downloads BLAST search View dataset information

Annotations Explorer: Porphyridium purpureum UTEX161

Overview

Assembly Details

Assembly name Porphyridium purpureum UTEX161
AlgaeDB ID Por_purp_UTEX161
Strain/Intraspecific name UTEX161
Source NCBI
Source ID GCA_019702435.1
NCBI Txid 35688
Bioproject PRJNA517804
Year 2021
Assembly type Genome
Assembly level Scaffold
Sequencing technology PacBio
Assembly method ABySS v.2.1.5

Assembly Statistics

Assembly Length (bp) 19,672,903
Assembly BUSCO score C: 67.5 (S: 67.1 D: 0.4) F: 8.2 M: 24.3
Protein BUSCO score C: 66.3 (S: 65.1 D: 1.2) F: 11.4 M: 22.3
Assembly coverage 100.0x
GC content 55.56
Gene count 7,243
Contigs 5,090
Contig N50 11,707
Contig L50 330
Scaffolds 3,934
Scaffold N50 18,818
Scaffold L50 221

Biosample Details

Biosample SAMN10845617
Location Basel, Switzerland
Tissue cells
Broad context Terrestrial
Local context Wet shaded turf
Further information https://utex.org/products/utex-0161

Search annotations by type

Search annotations by description

Search Enzyme annotations

Search KEGG annotations

Assembly summary graphs










Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






To top