Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Gracilariales
Family
  • Gracilariaceae
Subfamily
  • Gracilarioideae
Subfamily
  • Gracilarieae

Related assemblies


References

Articles

See also:

Compare all annotations Downloads BLAST search View dataset information

Annotations Explorer: Gracilaria blodgettii LJPN

Overview

Assembly Details

Assembly name Gracilaria blodgettii LJPN
AlgaeDB ID Grac_blod_LJPN
Source 1KP
Source ID LJPN
NCBI Txid 203266
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 18,307,464
Assembly BUSCO score C: 66.3 (S: 58.8 D: 7.5) F: 12.5 M: 21.2
Protein BUSCO score C: 44.3 (S: 40.4 D: 3.9) F: 10.6 M: 45.1
GC content 51.17
Gene count 4,076
Contigs 21,842
Contig N50 2,244
Contig L50 2,403
Scaffolds 20,988
Scaffold N50 2,372
Scaffold L50 2,284

Biosample Details

Biosample SAMEA104171188
Tissue branches

Search annotations by type

Search annotations by description

Search Enzyme annotations

Search KEGG annotations

Assembly summary graphs










Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






To top