Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Gracilariales
Family
  • Gracilariaceae
Subfamily
  • Gracilarioideae
Subfamily
  • Gracilarieae

Related assemblies


References

Articles

See also:

Compare all annotations Downloads BLAST search View dataset information

Annotations Explorer: Gracilaria sp. PWKQ

Overview

Assembly Details

Assembly name Gracilaria sp. PWKQ
AlgaeDB ID Grac_sp _PWKQ
Source 1KP
Source ID PWKQ
NCBI Txid 33673
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 18,951,107
Assembly BUSCO score C: 65.5 (S: 55.7 D: 9.8) F: 12.5 M: 22.0
Protein BUSCO score C: 42.4 (S: 36.5 D: 5.9) F: 13.3 M: 44.3
GC content 50.62
Gene count 4,058
Contigs 18,154
Contig N50 2,404
Contig L50 2,479
Scaffolds 17,289
Scaffold N50 2,539
Scaffold L50 2,360

Biosample Details

Biosample SAMEA104171194
Tissue branches and blades

Search annotations by type

Search annotations by description

Search Enzyme annotations

Search KEGG annotations

Assembly summary graphs










Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






To top