Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Gracilariales
Family
  • Gracilariaceae
Subfamily
  • Gracilarioideae
Subfamily
  • Gracilarieae

Related assemblies


References

Articles

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Annotations Explorer: Gracilaria domingensis SP 400837

Overview

Assembly Details

Assembly name Gracilaria domingensis SP 400837
AlgaeDB ID Grac_dom_SP400837
Strain/Intraspecific name SP 400837
Source NCBI
Source ID GCA_022539475.1
NCBI Txid 172961
Bioproject PRJNA544476
Year 2022
Assembly type Genome
Assembly level Scaffold
Sequencing technology PacBio RSII
Assembly method miniasm v.0.2

Assembly Statistics

Assembly Length (bp) 77,948,086
Assembly BUSCO score C: 74.1 (S: 72.5 D: 1.6) F: 4.7 M: 21.2
Protein BUSCO score C: 60.4 (S: 60.0 D: 0.4) F: 8.6 M: 31.0
Assembly coverage 180.0x
GC content 50.23
Gene count 11,532
Contigs 1,100
Contig N50 133,586
Contig L50 165
Scaffolds 686
Scaffold N50 189,322
Scaffold L50 117

Biosample Details

Biosample SAMN11840808
Location Brazil: Santa Catarina, Lagoinha beach
Broad context Marine
Local context Intertidal zone (ENVO:00000316)
Growth stage/Age
Sex

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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