Taxonomy:

Phylum
  • Rhodophyta
Subphylum
  • Eurhodophytina
Class
  • Florideophyceae
Subclass
  • Rhodymeniophycidae
Order
  • Gracilariales
Family
  • Gracilariaceae
Subfamily
  • Gracilarioideae
Subfamily
  • Gracilarieae

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References

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Annotations Explorer: Gracilaria vermiculophylla VNAL

Overview

Assembly Details

Assembly name Gracilaria vermiculophylla VNAL
AlgaeDB ID Grac_verm_VNAL
Source 1KP
Source ID VNAL
NCBI Txid 2608709
Bioproject PRJEB21674
Year 2019
Assembly type Transcriptome
Assembly level Scaffold
Sequencing technology Illumina HiSeq 2000
Assembly method SOAPdenovo

Assembly Statistics

Assembly Length (bp) 19,491,316
Assembly BUSCO score C: 71.8 (S: 55.7 D: 16.1) F: 9.0 M: 19.2
Protein BUSCO score C: 42.0 (S: 36.5 D: 5.5) F: 9.0 M: 49.0
GC content 51.54
Gene count 3,353
Contigs 13,547
Contig N50 1,474
Contig L50 3,986
Scaffolds 13,339
Scaffold N50 4.038
Scaffold L50 1,449

Biosample Details

Biosample SAMEA104171187
Tissue branches

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Feedback

Is this information correct? Do you have data you want to add to this database? Got any questions? If so, please contact me at Lachlan.McKinnie@research.usc.edu.au






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