|
Ahnfeltiopsis flabelliformis CKXF
T
P
F
|
CKXF |
CKXF |
Transcriptome |
73.7%
|
2019 |
1KP |
None |
None |
Scaffold |
25,517,125
|
4,194
|
50.67 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Phyllophoraceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Harvey) Masuda 1993 |
P.C. Silva & DeCew, 1992 |
|
|
Betaphycus philippinensis BWVJ
T
P
F
|
BWVJ |
BWVJ |
Transcriptome |
71.0%
|
2019 |
1KP |
None |
None |
Scaffold |
23,061,284
|
4,138
|
53.34 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Solieriaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Esper) Doty ex P.C. Silva 1996 |
Doty, 1996 |
|
|
Ceramium kondoi VZWX
T
P
F
|
VZWX |
VZWX |
Transcriptome |
55.7%
|
2019 |
1KP |
None |
None |
Scaffold |
18,141,136
|
3,837
|
61.48 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Ceramiaceae |
Ceramieae |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Yendo 1920 |
Roth, 1797, nom. et typ. cons. |
|
|
Chondrus crispus UGPM
T
P
F
|
UGPM |
UGPM |
Transcriptome |
67.4%
|
2019 |
1KP |
None |
None |
Scaffold |
20,323,968
|
4,265
|
53.81 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Gigartinaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Stackhouse 1797 |
Stackhouse, 1797 |
|
|
Chroodactylon ornatum LLXJ
T
P
F
|
LLXJ |
LLXJ |
Transcriptome |
72.2%
|
2019 |
1KP |
None |
None |
Scaffold |
26,833,271
|
6,832
|
60.15 |
Rhodophyta |
Proteorhodophytina |
Stylonematophyceae |
None |
Stylonematales |
None |
Stylonemataceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(C. Agardh) Basson 1979 |
Hansgirg, 1885 |
|
|
Dumontia simplex IEHF
T
P
F
|
IEHF |
IEHF |
Transcriptome |
61.6%
|
2019 |
1KP |
None |
None |
Scaffold |
18,414,637
|
4,238
|
52.83 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Dumontiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Cotton 1906 |
J.V. Lamouroux, 1813 |
|
|
Eucheuma denticulatum JEBK
T
P
F
|
JEBK |
JEBK |
Transcriptome |
71.0%
|
2019 |
1KP |
None |
None |
Scaffold |
22,125,769
|
4,063
|
52.77 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Solieriaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(N.L. Burman) Collins & Hervey 1917 |
J. Agardh, 1847 |
|
|
Glaucosphaera vacuolata RSOF
T
P
F
|
RSOF |
RSOF |
Transcriptome |
26.7%
|
2019 |
1KP |
None |
None |
Scaffold |
17,238,587
|
4,835
|
53.79 |
Rhodophyta |
Proteorhodophytina |
Rhodellophyceae |
None |
Glaucosphaerales |
None |
Glaucosphaeraceae |
Glaucosphaera |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Korshikov 1930 |
Korshikov, 1930 |
|
|
Gloiopeltis furcata SBLT
T
P
F
|
SBLT |
SBLT |
Transcriptome |
72.1%
|
2019 |
1KP |
None |
None |
Scaffold |
19,495,300
|
4,024
|
52.58 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Endocladiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Postels & Ruprecht) J.Agardh 1851 |
J. Agardh, 1842 |
|
|
Gracilaria blodgettii LJPN
T
P
F
|
LJPN |
LJPN |
Transcriptome |
66.3%
|
2019 |
1KP |
None |
None |
Scaffold |
18,307,464
|
4,076
|
51.17 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Harvey 1853 |
Greville, 1830, nom. et typ. cons. |
|
|
Gracilaria chouae FTRP
T
P
F
|
FTRP |
FTRP |
Transcriptome |
75.6%
|
2019 |
1KP |
None |
None |
Scaffold |
19,661,331
|
3,558
|
50.19 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Zhang & B.M. Xia 1992 |
Greville, 1830, nom. et typ. cons. |
|
|
Gracilaria sp. PWKQ
T
P
F
|
PWKQ |
PWKQ |
Transcriptome |
65.5%
|
2019 |
1KP |
None |
None |
Scaffold |
18,951,107
|
4,058
|
50.62 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
None |
Greville, 1830, nom. et typ. cons. |
|
|
Gracilaria vermiculophylla VNAL
T
P
F
|
VNAL |
VNAL |
Transcriptome |
71.8%
|
2019 |
1KP |
None |
Agarophyton vermiculophyllum |
Scaffold |
19,491,316
|
3,353
|
51.54 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Ohmi) Papenfuss 1967 |
Greville, 1830, nom. et typ. cons. |
|
|
Gracilariopsis lemaneiformis IKWM
T
P
F
|
IKWM |
IKWM |
Transcriptome |
79.3%
|
2019 |
1KP |
None |
Gracilaria lemaneiformis |
Scaffold |
24,604,651
|
4,765
|
50.97 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilariopsidae |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Bory) E.Y. Dawson, Acleto & Foldvik 1964 |
E.Y. Dawson, 1949 |
|
|
Grateloupia catenata PYDB
T
P
F
|
PYDB |
PYDB |
Transcriptome |
74.6%
|
2019 |
1KP |
None |
None |
Scaffold |
22,821,652
|
4,792
|
49.07 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Halymeniales |
None |
Grateloupiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Yendo 1920 |
C. Agardh, 1822, nom. cons. |
|
|
Grateloupia filicina ZJOJ
T
P
F
|
ZJOJ |
ZJOJ |
Transcriptome |
72.6%
|
2019 |
1KP |
None |
None |
Scaffold |
30,251,908
|
7,156
|
51.07 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Halymeniales |
None |
Grateloupiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(J.V. Lamouroux) C. Agardh 1822 |
C. Agardh, 1822, nom. cons. |
|
|
Grateloupia livida IKIZ
T
P
F
|
IKIZ |
IKIZ |
Transcriptome |
70.6%
|
2019 |
1KP |
None |
None |
Scaffold |
17,853,008
|
3,767
|
50.31 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Halymeniales |
None |
Grateloupiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Harvey) Yamada 1931 |
C. Agardh, 1822, nom. cons. |
|
|
Grateloupia turuturu URSB
T
P
F
|
URSB |
URSB |
Transcriptome |
75.3%
|
2019 |
1KP |
None |
None |
Scaffold |
20,128,755
|
3,924
|
48.74 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Halymeniales |
None |
Grateloupiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Y. Yamada 1941 |
C. Agardh, 1822, nom. cons. |
|
|
Heterosiphonia pulchra YSBD
T
P
F
|
YSBD |
YSBD |
Transcriptome |
67.8%
|
2019 |
1KP |
None |
None |
Scaffold |
23,403,852
|
4,602
|
51.32 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Delesseriaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Okamura) Falkenberg 1901 |
Montagne, 1842, nom. cons. |
|
|
Kappaphycus alvarezii IHJY
T
P
F
|
IHJY |
IHJY |
Transcriptome |
51.7%
|
2019 |
1KP |
None |
None |
Scaffold |
26,295,304
|
5,480
|
52.07 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Solieriaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Doty) L.M. Liao 1996 |
Doty, 1988 |
|
|
Mazzaella japonica WEJN
T
P
F
|
WEJN |
WEJN |
Transcriptome |
63.5%
|
2019 |
1KP |
None |
None |
Scaffold |
21,206,646
|
4,566
|
52.765 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Gigartinaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Mikami) Hommersand 1993 |
G. De Toni, 1936 |
|
|
Neosiphonia japonica XAXW
T
P
F
|
XAXW |
XAXW |
Transcriptome |
52.5%
|
2019 |
1KP |
None |
Melanothamnus japonicus |
Scaffold |
18,000,548
|
3,939
|
41.29 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Rhodomelaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Harvey) Díaz-Tapia & Maggs 2017 |
M.-S. Kim & I.K. Lee, 1999 |
|
|
Porphyridium cruentum OBUY
T
P
F
|
OBUY |
OBUY |
Transcriptome |
29.8%
|
2019 |
1KP |
None |
None |
Scaffold |
12,465,703
|
3,569
|
55.38 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(S.F. Gray) Nägeli 1849 |
Nägeli, 1849, nom. cons. |
|
|
Porphyridium purpureum PVGP
T
P
F
|
PVGP |
PVGP |
Transcriptome |
23.1%
|
2019 |
1KP |
None |
None |
Scaffold |
11,975,335
|
3,117
|
55.49 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Bory) K.M. Drew & R. Ross 1965 |
Nägeli, 1849, nom. cons. |
|
|
Neopyropia yezoensis ZULJ
T
P
F
|
ZULJ |
ZULJ |
Transcriptome |
40.4%
|
2019 |
1KP |
None |
Pyropia yezoensis |
Scaffold |
29,605,524
|
6,206
|
55.63 |
Rhodophyta |
Eurhodophytina |
Bangiophyceae |
Bangiophycidae |
Bangiales |
None |
Bangiaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Ueda) L.-E. Yang & J. Brodie 2020 |
L.-E. Yang & J. Brodie 2020 |
|
|
Rhodella violacea RTLC
T
P
F
|
RTLC |
RTLC |
Transcriptome |
52.5%
|
2019 |
1KP |
None |
None |
Scaffold |
17,961,962
|
4,475
|
60.43 |
Rhodophyta |
Proteorhodophytina |
Rhodellophyceae |
None |
Glaucosphaerales |
None |
Glaucosphaeraceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Kornmann) Wehrmeyer 1971 |
L.V. Evans, 1970 |
|
|
Rhodochaete parvula JJZR
T
P
F
|
JJZR |
JJZR |
Transcriptome |
73.7%
|
2019 |
1KP |
None |
None |
Scaffold |
26,263,391
|
3,850
|
57.76 |
Rhodophyta |
Proteorhodophytina |
Compsopogonophyceae |
None |
Rhodochaetales |
None |
Rhodochaetaceae |
None |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
Thuret ex Bornet 1892 |
Thuret ex Bornet, 1892 |
|
|
Symphyocladia latiuscula UYFR
T
P
F
|
UYFR |
UYFR |
Transcriptome |
32.1%
|
2019 |
1KP |
None |
None |
Scaffold |
18,498,696
|
4,209
|
38.63 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Rhodomelaceae |
Pterosiphonieae |
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart Jr, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen & Gane Ka-Shu Wong;
Eric J Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Shuangxiu Wu, Jing Sun, Jun Yu, Fabio Rocha Jimenez Vieira, Chris Bowler, Richard G Dorrell, Matthew A Gitzendanner, Ling Li, Wensi Du, Kristian K. Ullrich, Norman J Wickett, Todd J Barkmann, Michael S Barker, James H Leebens-Mack, Gane Ka-Shu Wong;
|
One thousand plant transcriptomes and the phylogenomics of green plants;
Access to RNA-sequencing data from 1, 173 plant species: The 1000 Plant transcriptomes initiative (1KP);
|
Nature
GigaScience
|
(Harvey) Yamada 1941 |
Falkenberg, 1897 |
|
|
Asparagopsis taxiformis SC
G
P
F
|
GCA_030407315.1 |
AtaSC |
Genome |
79.6%
|
2022 |
NCBI |
SC |
None |
Scaffold |
142,472,235
|
10,863
|
49.87 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Bonnemaisoniales |
None |
Bonnemaisoniaceae |
None |
Zhao, M., Campbell, A.H., Patwary, Z.P., Wang, T., Lang, T., Webb, J., Zuccarello, G.C., Wegner, A., Heyne, D., McKinnie, L., Pascelli, C., Satoh, N., Shoguchi, E., Paul N.A., Cummins, S.F.;
|
The red seaweed Asparagopsis taxiformis genome and integrative -omics analysis;
|
Research Square
|
(Delile) Trevisan 1845 |
Montagne, 1840 |
|
|
Compsopogon caeruleus MMETSP0312
T
P
F
|
MMETSP0312 |
None |
Transcriptome |
71.0%
|
2021 |
MMETSP_Vlierberghe |
SAG 36.94 |
None |
None |
21,406,377
|
8,351
|
50.54 |
Rhodophyta |
Proteorhodophytina |
Compsopogonophyceae |
None |
Compsopogonales |
None |
Compsopogonaceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
(Balbis ex C.Agardh) Montagne 1846 |
Montagne, 1846 |
|
|
Erythrolobus australicus MMETSP1353
T
P
F
|
MMETSP1353 |
None |
Transcriptome |
38.4%
|
2021 |
MMETSP_Vlierberghe |
CCMP3124 |
None |
None |
13,392,163
|
6,556
|
58.24 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
E.C. Yang, J.L. Scott & J.A. West 2011 |
J.L. Scott, J.B. Baca, F.D. Ott & J.A. West, 2006 |
|
|
Erythrolobus madagascarensis MMETSP1354
T
P
F
|
MMETSP1354 |
None |
Transcriptome |
26.3%
|
2021 |
MMETSP_Vlierberghe |
CCMP3276 |
None |
None |
12,872,616
|
6,383
|
54.93 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
E.C. Yang, J.L. Scott & J.A. West 2010 |
J.L. Scott, J.B. Baca, F.D. Ott & J.A. West, 2006 |
|
|
Madagascaria erythrocladioides MMETSP1450
T
P
F
|
MMETSP1450 |
None |
Transcriptome |
50.2%
|
2021 |
MMETSP_Vlierberghe |
CCMP3234 |
None |
None |
33,247,345
|
16,988
|
62.59 |
Rhodophyta |
Proteorhodophytina |
Compsopogonophyceae |
None |
Erythropeltales |
None |
incertae sedis |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
J.A. West & N. Kikuchi 2010 |
J.A. West & N. Kikuchi, 2010 |
|
|
Porphyridium aerugineum MMETSP0313
T
P
F
|
MMETSP0313 |
None |
Transcriptome |
34.9%
|
2021 |
MMETSP_Vlierberghe |
SAG 1380-2 |
None |
None |
15,731,035
|
10,866
|
48.89 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
Geitler 1923 |
Nägeli, 1849, nom. cons. |
|
|
Rhodella violacea MMETSP0167
T
P
F
|
MMETSP0167 |
None |
Transcriptome |
37.3%
|
2021 |
MMETSP_Vlierberghe |
CCMP736 |
Rhodella maculata |
None |
20,957,787
|
9,433
|
58.9 |
Rhodophyta |
Proteorhodophytina |
Rhodellophyceae |
None |
Glaucosphaerales |
None |
Glaucosphaeraceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
(Kornmann) Wehrmeyer 1971 |
L.V. Evans, 1970 |
|
|
Rhodella violacea MMETSP0314
T
P
F
|
MMETSP0314 |
None |
Transcriptome |
36.1%
|
2021 |
MMETSP_Vlierberghe |
CCMP736 |
Rhodella maculata |
None |
17,399,637
|
5,896
|
59.98 |
Rhodophyta |
Proteorhodophytina |
Rhodellophyceae |
None |
Glaucosphaerales |
None |
Glaucosphaeraceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
(Kornmann) Wehrmeyer 1971 |
L.V. Evans, 1970 |
|
|
Rhodosorus marinus MMETSP0011
T
P
F
|
MMETSP0011 |
None |
Transcriptome |
80.8%
|
2021 |
MMETSP_Vlierberghe |
CCMP 769 |
None |
None |
105,774,618
|
46,544
|
50.24 |
Rhodophyta |
Proteorhodophytina |
Stylonematophyceae |
None |
Stylonematales |
None |
Stylonemataceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
Thuret ex Bornet 1892 |
Geitler, 1930 |
|
|
Rhodosorus marinus MMETSP0315
T
P
F
|
MMETSP0315 |
None |
Transcriptome |
39.6%
|
2021 |
MMETSP_Vlierberghe |
UTEX LB 2760 |
None |
None |
19,209,911
|
9,575
|
50.08 |
Rhodophyta |
Proteorhodophytina |
Stylonematophyceae |
None |
Stylonematales |
None |
Stylonemataceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
Thuret ex Bornet 1892 |
Geitler, 1930 |
|
|
Timspurckia oligopyrenoides MMETSP1172
T
P
F
|
MMETSP1172 |
None |
Transcriptome |
50.2%
|
2021 |
MMETSP_Vlierberghe |
CCMP3278 |
None |
None |
14,646,350
|
8,492
|
42.19 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S. Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M. Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B. Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C. Posewitz, Karin Rengefors, Giovanna Romano, Mary E. Rumpho, Tatiana Rynearson, Kelly B. Schilling, Declan C. Schroeder, Alastair G. B. Simpson, Claudio H. Slamovits, David R. Smith, G. Jason Smith, Sarah R. Smith, Heidi M. Sosik, Peter Stief, Edward Theriot, Scott N. Twary, Pooja E. Umale, Daniel Vaulot, Boris Wawrik, Glen L. Wheeler, William H. Wilson, Yan Xu, Adriana Zingone, Alexandra Z. Worden;
Mick Van Vlierberghe, Arnaud Di Franco, Hervé Philippe & Denis Baurain;
|
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing;
Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project;
|
PLoS Biology
BMC Research Notes
|
E.C. Yang, J.L. Scott & J.A. West 2010 |
E.C. Yang, J.L. Scott & J.A. West, 2010 |
|
|
Chondria armata KPJ-CA19
H
F
|
GCA_021653855.1 |
SIO_Carma_v2.2 |
Hologenome |
73.7%
|
2022 |
NCBI |
KPJ-CA19 |
None |
Scaffold |
507,564,393
|
25,131
|
45.33 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Rhodomelaceae |
Chondrieae |
Taylor S. Steele, John K. Brunson, Yukari Maeno, Ryuta Terada, Andrew E. Allen, Mari Yotsu-Yamashita, Jonathan R. Chekan, and Bradley S. Moore;
|
Domoic acid biosynthesis in the red alga Chondria armata suggests a complex evolutionary history for toxin production;
|
PNAS
|
(Kützing) Okamura 1907 |
C. Agardh, 1817, nom. cons. |
|
|
Cyanidiococcus yangmingshanensis THAL066
G
P
F
|
GCA_013995675.1 |
ASM1399567v1 |
Genome |
59.6%
|
2020 |
NCBI |
THAL066 |
None |
Contig |
12,072,675
|
5,189
|
54.61 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Cyanidioschyzonales |
None |
Cyanidioschyzonaceae |
None |
|
|
|
S.-L. Liu, Y.-R. Chiang, H.S. Yoon & H.-Y. Fu 2020 |
S.-L. Liu, Y.R., Chiang, H.S. Yoon & H.-Y. Fu, 2020 |
|
|
Cyanidioschyzon merolae 10D
G
P
F
|
GCF_000091205.1 |
ASM9120v1 |
Genome |
71.8%
|
2007 |
NCBI |
10D |
None |
Complete genome |
16,546,747
|
4,803
|
54.35 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Cyanidioschyzonales |
None |
Cyanidioschyzonaceae |
None |
Hisayoshi Nozaki, Hiroyoshi Takano, Osami Misumi, Kimihiro Terasawa, Motomichi Matsuzaki, Shinichiro Maruyama, Keiji Nishida, Fumi Yagisawa, Yamato Yoshida, Takayuki Fujiwara, Susumu Takio, Katsunori Tamura, Sung Jin Chung, Soichi Nakamura, Haruko Kuroiwa, Kan Tanaka, Naoki Sato & Tsuneyoshi Kuroiwa;
Motomichi Matsuzaki, Osami Misumi, Tadasu Shin-i, Shinichiro Maruyama, Manabu Takahara, Shin-ya Miyagishima, Toshiyuki Mori, Keiji Nishida, Fumi Yagisawa, Keishin Nishida, Yamato Yoshida, Yoshiki Nishimura, Shunsuke Nakao, Tamaki Kobayashi, Yu Momoyama, Tetsuya Higashiyama, Ayumi Minoda, Masako Sano, Hisayo Nomoto, Kazuko Oishi, Hiroko Hayashi, Fumiko Ohta, Satoko Nishizaka, Shinobu Haga, Sachiko Miura, Tomomi Morishita, Yukihiro Kabeya, Kimihiro Terasawa, Yutaka Suzuki, Yasuyuki Ishii, Shuichi Asakawa, Hiroyoshi Takano, Niji Ohta, Haruko Kuroiwa, Kan Tanaka, Nobuyoshi Shimizu, Sumio Sugano, Naoki Sato, Hisayoshi Nozaki, Naotake Ogasawara, Yuji Kohara & Tsuneyoshi Kuroiwa;
|
A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae;
Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D;
|
BMC Biology
Nature
|
De Luca, Taddei & Varano 1978 |
De Luca, Taddei & Varano, 1978 |
|
|
Cyanidioschyzon merolae 10D-T
G
P
F
|
GCA_011170005.1 |
CME10DT assembly |
Genome |
70.6%
|
2020 |
NCBI |
10D-T |
None |
Contig |
16,463,082
|
3,841
|
54.67 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Cyanidioschyzonales |
None |
Cyanidioschyzonaceae |
None |
Ohta N., Sato N. & Kurowwa T.;
|
Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence;
|
Nucleic Acids Research
|
De Luca, Taddei & Varano 1978 |
De Luca, Taddei & Varano, 1978 |
|
|
Cyanidioschyzon merolae GT
G
P
F
|
GCA_010725195.1 |
CMEGT assembly |
Genome |
71.4%
|
2020 |
NCBI |
GT |
None |
Contig |
16,378,681
|
3,876
|
54.79 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Cyanidioschyzonales |
None |
Cyanidioschyzonaceae |
None |
Ohta N., Sato N. & Kurowwa T.;
|
Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence;
|
Nucleic Acids Research
|
De Luca, Taddei & Varano 1978 |
De Luca, Taddei & Varano, 1978 |
|
|
Cyanidium caldarium UTEX2393
G
P
F
|
GCA_019693505.1 |
ASM1969350v1 |
Genome |
55.3%
|
2021 |
NCBI |
UTEX2393 |
None |
Scaffold |
11,413,374
|
3,958
|
40.32 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Cyanidiales |
None |
Cyanidioschyzonaceae |
None |
David R. Nelson, Khaled M. Hazzouri, Kyle J. Lauersen, Ashish Jaiswal, Amphun Chaiboonchoe, Alexandra Mystikou, Weiqi Fu, Sarah Daakour, Bushra Dohai, Amnah Alzahmi, David Nobles, Mark Hurd, Julie Sexton, Michael J. Preston, Joan Blanchette, Michael W. Lomas, Khaled M.A. Amiri, Kourosh Salehi-Ashtiani;
|
Large-scale genome sequencing reveals the driving forces of viruses in microalgal evolution;
|
ScienceDirect
|
(Tilden) Geitler 1933 |
Geitler, 1933 |
|
|
Cyanophora paradoxa CCMP329
G
P
F
|
GCA_004431415.1 |
ASM443141v1 |
Genome |
47.5%
|
2019 |
NCBI |
CCMP329 |
None |
Contig |
99,940,401
|
11,972
|
63.43 |
Glaucophyta |
None |
Glaucophyceae |
None |
Glaucocystales |
None |
Glaucocystaceae |
None |
Dana C Price, Ursula W Goodenough, Robyn Roth, Jae-Hyeok Lee, Thamali Kariyawasam, Marek Mutwil, Camilla Ferrari, Fabio Facchinelli, Steven G Ball, Ugo Cenci, Cheong Xin Chan, Nicole E Wagner, Hwan Su Yoon, Andreas P M Weber, and Debashish Bhattacharya;
|
Analysis of an improved Cyaniphora paradoxa genome assembly;
|
DNA Research
|
Korshikov |
A.A. Korshikov, 1924 |
|
|
Galdieria sulphuraria 074W
G
P
F
|
GCA_000341285.1 |
ASM34128v1 |
Genome |
73.0%
|
2013 |
NCBI |
074W |
None |
Scaffold |
13,712,004
|
7,174
|
37.7 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
GERALD SCHÖNKNECHT , WEI-HUA CHEN, CHAD M. TERNES, GUILLAUME G. BARBIER, ROSHAN P. SHRESTHA, MARIO STANKE, ANDREA BRÄUTIGAM, BRETT J. BAKER, JILLIAN F. BANFIELD, R. MICHAEL GARAVITO, KEVIN CARR, CURTIS WILKERSON, STEFAN A. RENSING, DAVID GAGNEUL, NICHOLAS E. DICKENSON, CHRISTINE OESTERHELT, MARTIN J. LERCHER, AND ANDREAS P. M. WEBER;
|
Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote;
|
Science
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria 107.79
G
|
GCA_001704855.1 |
ASM170485v1 |
Genome |
1.2%
|
2016 |
NCBI |
107.79 |
None |
Contig |
12,093,695
|
N/A
|
41.26 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
|
|
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria UTEX2919
G
P
F
|
GCA_019693475.1 |
ASM1969347v1 |
Genome |
60.0%
|
2021 |
NCBI |
UTEX2919 |
None |
Scaffold |
14,584,420
|
4,959
|
40.12 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
David R. Nelson, Khaled M. Hazzouri, Kyle J. Lauersen, Ashish Jaiswal, Amphun Chaiboonchoe, Alexandra Mystikou, Weiqi Fu, Sarah Daakour, Bushra Dohai, Amnah Alzahmi, David Nobles, Mark Hurd, Julie Sexton, Michael J. Preston, Joan Blanchette, Michael W. Lomas, Khaled M.A. Amiri, Kourosh Salehi-Ashtiani;
|
Large-scale genome sequencing reveals the driving forces of viruses in microalgal evolution;
|
ScienceDirect
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Gracilaria domingensis SP 400837
G
P
F
|
GCA_022539475.1 |
USP_GDom_1.0 |
Genome |
74.1%
|
2022 |
NCBI |
SP 400837 |
None |
Scaffold |
77,948,086
|
11,532
|
50.23 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
Natalia Nakamura-Gouvea, Cicero Alves-Lima, Luiz Felipe Benites, Cintia Iha, Vinicius Maracaja-Coutinho, Victor Aliaga-Tobar, Marcella Araujo Amaral Carneiro, Nair S. Yokoya, Eliane Marinho-Soriano, Marcia A. S. Graminha, Jonas Collén, Mariana C. Oliveira, Joao C. Setubal, Pio Colepicolo;
|
Insights into agar and secondary metabolite pathways from the genome of the red alga Gracilaria domingensis (Rhodophyta, Gracilariales);
|
Journal of Phycology
|
(Kützing) Sonder ex Dickie 1874 |
Greville, 1830, nom. et typ. cons. |
|
|
Gracilaria vermiculophylla HapMaleFtJ-2017
G
P
F
|
GCA_019155205.2 |
ASM1915520v2 |
Genome |
60.4%
|
2021 |
NCBI |
HapMaleFtJ-2017 |
Agarophyton vermiculophyllum |
Scaffold |
47,804,795
|
4,614
|
47.65 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
Ben A. Flanagan, Stacy A. Krueger-Hadfield, Courtney J. Murren, Chris C. Nice, Allan E. Strand, Erik E. Sotka;
|
Founder effects shape linkage disequilibrium and genomic diversity of a partially clonal invader;
|
Molecular Ecology
|
(Ohmi) Papenfuss 1967 |
Greville, 1830, nom. et typ. cons. |
|
|
Gracilariopsis chorda SKKU-2015
G
P
F
|
GCA_003194525.1 |
GraCho1.0 |
Genome |
78.4%
|
2018 |
NCBI |
SKKU-2015 |
None |
Contig |
92,180,038
|
10,806
|
49.27 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilariopsidae |
JunMo Lee, Eun Chan Yang, Louis Graf, Ji Hyun Yang, Huan Qiu, Udi Zelzion, Cheong Xin Chan, Timothy G Stephens, Andreas P M Weber, Ga Hun Boo, Sung Min Boo, Kyeong Mi Kim, Younhee Shin, Myunghee Jung, Seung Jae Lee, Hyung-Soon Yim, Jung-Hyun Lee, Debashish Bhattacharya, Hwan Su Yoon;
|
Analysis of the Draft Genome of the Red Seaweed Gracilariopsis chorda Provides Insights into Genome Size Evolution in Rhodophyta;
|
Molecular Biology and Evolution
|
(Holmes) Ohmi 1958 |
E.Y. Dawson, 1949 |
|
|
Gracilariopsis lemaneiformis 981
G
P
F
|
GCA_003346895.1 |
Glem_v01 |
Genome |
78.1%
|
2018 |
NCBI |
981 |
Gracilaria lemaneiformis |
Scaffold |
88,693,116
|
10,949
|
49.94 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilariopsidae |
|
|
|
(Bory) E.Y. Dawson, Acleto & Foldvik 1964 |
E.Y. Dawson, 1949 |
|
|
Kappaphycus alvarezii kp
G
F
|
GCA_002205965.3 |
ASM220596v3 |
Genome |
59.2%
|
2020 |
NCBI |
kp |
None |
Contig |
336,052,185
|
13,681
|
45.36 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Solieriaceae |
None |
Shangang Jia, Guoliang Wang, Guiming Liu, Jiangyong Qu, Beilun Zhao, Xinhao Jin, Lei Zhang, Jinlong Yin, Cui Liu, Guangle Shan, Shuangxiu Wu, Lipu Song, Tao Liu, Xumin Wang, Jun Yu;
|
High-quality de novo genome assembly of Kappaphycus alvarezii based on both PacBio and HiSeq sequencing;
|
bioRxiv
|
(Doty) L.M. Liao 1996 |
Doty, 1988 |
N/A
|
|
Neoporphyra haitanensis PH40
G
P
F
|
GCA_008729055.1 |
OUC_PyHait |
Genome |
27.9%
|
2019 |
NCBI |
PH40 |
Porphyra haitanensis |
Scaffold |
53,254,617
|
5,689
|
71.26 |
Rhodophyta |
Eurhodophytina |
Bangiophyceae |
Bangiophycidae |
Bangiales |
None |
Bangiaceae |
None |
|
|
|
(T.J. Chang & B.F. Zheng) J. Brodie & L.-E. Yang 2020 |
C. Agardh, 1824, nom. cons. |
|
|
Neoporphyra haitanensis ZD1
G
P
F
|
GCA_021651115.1 |
ASM2165111v1 |
Genome |
23.5%
|
2022 |
NCBI |
ZD1 |
Porphyra haitanensis |
Chromosome |
49,666,066
|
5,806
|
70.12 |
Rhodophyta |
Eurhodophytina |
Bangiophyceae |
Bangiophycidae |
Bangiales |
None |
Bangiaceae |
None |
Haimin Chen, Jeffrey Shih-Chieh Chu, Juanjuan Chen, Qijun Luo, Huan Wang, Rui Lu, Zhujun Zhu, Gaigai Yuan, Xinxin Yi, Youzhi Mao, Caiping Lu, Zekai Wang, Denghui Gu, Zhen Jin, Caixia Zhang, Ziyu Weng, Shuang Li, Xiaojun Yan, Rui Yang;
|
Insights into the Ancient Adaptation to Intertidal Environments by Red Algae Based on a Genomic and Multiomics Investigation of Neoporphyra haitanensis;
|
Molecular Biology and Evolution
|
(T.J. Chang & B.F. Zheng) J. Brodie & L.-E. Yang 2020 |
C. Agardh, 1824, nom. cons. |
|
|
Neopyropia yezoensis RZ
G
P
F
|
GCA_009829735.1 |
ASM982973v1 |
Genome |
31.8%
|
2020 |
NCBI |
RZ |
Pyropia yezoensis |
Chromosome |
107,590,730
|
8,236
|
64.92 |
Rhodophyta |
Eurhodophytina |
Bangiophyceae |
Bangiophycidae |
Bangiales |
None |
Bangiaceae |
None |
|
|
|
(Ueda) L.-E. Yang & J. Brodie 2020 |
J. Agardh, 1899 |
|
|
Porphyra umbilicalis 4086291
G
P
F
|
GCA_002049455.2 |
P_umbilicalis_v1 |
Genome |
26.3%
|
2017 |
NCBI |
4086291 |
None |
Scaffold |
87,888,981
|
13,567
|
65.7 |
Rhodophyta |
Eurhodophytina |
Bangiophyceae |
Bangiophycidae |
Bangiales |
None |
Bangiaceae |
None |
Susan H. Brawley, Nicolas A. Blouin, Elizabeth Ficko-Blean, Glen L. Wheeler, Martin Lohr, Holly V. Goodson, Jerry W. Jenkins, Crysten E. Blaby-Haas, Katherine E. Helliwell, Cheong Xin Chan, Tara N. Marriage, Debashish Bhattacharya, Anita S. Klein, Yacine Badis, Juliet Brodie, Yuanyu Cao, Jonas Collén, Simon M. Dittami, Claire M. M. Gachon, Beverley R. Green, Steven J. Karpowicz, Jay W. Kim, Ulrich Johan Kudahl, Senjie Lin, Gurvan Michel, Maria Mittag, Bradley J. S. C. Olson, Jasmyn L. Pangilinan, Yi Peng, Huan Qiu, Shengqiang Shu, John T. Singer, Alison G. Smith, Brittany N. Sprecher, Volker Wagner, Wenfei Wang, Zhi-Yong Wang, Juying Yan, Charles Yarish, Simone Zäuner-Riek, Yunyun Zhuang, Yong Zou, Erika A. Lindquist, Jane Grimwood, Kerrie W. Barry, Daniel S. Rokhsar, Jeremy Schmutz, John W. Stiller, Arthur R. Grossman, and Simon E. Prochnik;
|
Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta);
|
PNAS
|
Kützing 1843 |
C. Agardh, 1824, nom. cons. |
|
|
Porphyridium purpureum GCA_000397085.1
G
P
F
|
GCA_000397085.1 |
Porphyridium purpureum |
Genome |
71.4%
|
2013 |
NCBI |
None |
None |
Contig |
19,451,899
|
7,182
|
55.5 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
|
|
|
(Bory) K.M. Drew & R. Ross 1965 |
Nägeli, 1849, nom. cons. |
|
|
Porphyridium purpureum CCMP1328
G
P
F
|
GCA_008690995.1 |
P_purpureum_CCMP1328_Hybrid_assembly |
Genome |
71.0%
|
2019 |
NCBI |
CCMP1328 |
None |
Contig |
22,192,338
|
9,898
|
55.91 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
|
|
|
(Bory) K.M. Drew & R. Ross 1965 |
Nägeli, 1849, nom. cons. |
|
|
Porphyridium purpureum UTEX161
G
P
F
|
GCA_019702435.1 |
ASM1970243v1 |
Genome |
67.5%
|
2021 |
NCBI |
UTEX161 |
None |
Scaffold |
19,672,903
|
7,243
|
55.56 |
Rhodophyta |
Proteorhodophytina |
Porphyrideophyceae |
None |
Porphyridiales |
None |
Porphyridiaceae |
None |
David R. Nelson, Khaled M. Hazzouri, Kyle J. Lauersen, Ashish Jaiswal, Amphun Chaiboonchoe, Alexandra Mystikou, Weiqi Fu, Sarah Daakour, Bushra Dohai, Amnah Alzahmi, David Nobles, Mark Hurd, Julie Sexton, Michael J. Preston, Joan Blanchette, Michael W. Lomas, Khaled M.A. Amiri, Kourosh Salehi-Ashtiani;
|
Large-scale genome sequencing reveals the driving forces of viruses in microalgal evolution;
|
ScienceDirect
|
(Bory) K.M. Drew & R. Ross 1965 |
Nägeli, 1849, nom. cons. |
|
|
Asparagopsis taxiformis Cali
G
P
F
|
GCA_018397975.1 |
spades |
Genome |
77.6%
|
2021 |
NCBI |
Cali |
None |
Scaffold |
75,200,346
|
9,896
|
46.7 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Bonnemaisoniales |
None |
Bonnemaisoniaceae |
None |
Hem R. Thapa, Zhenjian Lin, Dongqi Yi, Jennifer E. Smith, Eric W. Schmidt, and Vinayak Agarwal;
|
Genetic and Biochemical Reconstitution of Bromoform Biosynthesis in Asparagopsis Lends Insights into Seaweed Reactive Oxygen Species Enzymology;
|
ACS Chemical Biology
|
(Delile) Trevisan 1845 |
Montagne, 1840 |
|
|
Asparagopsis taxiformis Guam
G
P
F
|
GCA_018397955.1 |
ASM1839795v1 |
Genome |
77.2%
|
2021 |
NCBI |
Guam |
None |
Scaffold |
46,695,008
|
17,577
|
47.7 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Bonnemaisoniales |
None |
Bonnemaisoniaceae |
None |
Hem R. Thapa, Zhenjian Lin, Dongqi Yi, Jennifer E. Smith, Eric W. Schmidt, and Vinayak Agarwal;
|
Genetic and Biochemical Reconstitution of Bromoform Biosynthesis in Asparagopsis Lends Insights into Seaweed Reactive Oxygen Species Enzymology;
|
ACS Chemical Biology
|
(Delile) Trevisan 1845 |
Montagne, 1840 |
|
|
Chondrus crispus Stackhouse
G
P
F
|
GCF_000350225.1 |
ASM35022v2 |
Genome |
73.8%
|
2013 |
NCBI |
Stackhouse |
None |
Scaffold |
104,980,420
|
9,808
|
52.88 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Gigartinaceae |
None |
Jonas Collén, Betina Porcel, Wilfrid Carré, Steven G. Ball, Cristian Chaparro, Thierry Tonon, Tristan Barbeyron, Gurvan Michel, Benjamin Noel, Klaus Valentin, Marek Elias, François Artiguenave, Alok Arun, Jean-Marc Aury, José F. Barbosa-Neto, John H. Bothwell, François-Yves Bouget, Loraine Brillet, Francisco Cabello-Hurtado, Salvador Capella-Gutiérrez, Bénédicte Charrier, Lionel Cladière, J. Mark Cock, Susana M. Coelho, Christophe Colleoni, Mirjam Czjzek, Corinne Da Silva, Ludovic Delage, France Denoeud, Philippe Deschamps, Simon M. Dittami, Toni Gabaldón, Claire M. M. Gachon, Agnès Groisillier, Cécile Hervé, Kamel Jabbari, Michael Katinka, Bernard Kloareg, Nathalie Kowalczyk, Karine Labadie, Catherine Leblanc, Pascal J. Lopez, Deirdre H. McLachlan, Laurence Meslet-Cladiere, Ahmed Moustafa, Zofia Nehr, Pi Nyvall Collén, Olivier Panaud, Frédéric Partensky, Julie Poulain, Stefan A. Rensing, Sylvie Rousvoal, Gaelle Samson, Aikaterini Symeonidi, Jean Weissenbach, Antonios Zambounis, Patrick Wincker, and Catherine Boyen;
|
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida;
|
PNAS
|
Stackhouse 1797 |
Stackhouse, 1797 |
|
|
Cyanidioschyzon merolae Soos_CM
G
P
F
|
GCA_006232315.1 |
ASM623231v1 |
Genome |
65.1%
|
2019 |
Rossoni_dataset |
Soos_CM |
None |
Contig |
12,336,830
|
4,406
|
55.02 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Cyanidioschyzonales |
None |
Cyanidioschyzonaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
De Luca, Taddei & Varano 1978 |
De Luca, Taddei & Varano, 1978 |
|
|
Galdieria phlegrea Soos_GS
G
P
F
|
GCA_006232345.1 |
ASM623234v1 |
Genome |
71.0%
|
2019 |
Rossoni_dataset |
Soos_GS |
None |
Contig |
14,871,243
|
6,125
|
37.52 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
Pinto, Ciniglia, Cascone & Pollo, nom. inval. 2007 |
Merola, 1982 |
|
|
Galdieria sulphuraria 2
G
P
F
|
GCA_006232505.1 |
ASM623250v1 |
Genome |
63.1%
|
2019 |
Rossoni_dataset |
2 |
None |
Contig |
14,106,382
|
5,912
|
39.16 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria 5572
G
P
F
|
GCA_006232475.1 |
ASM623247v1 |
Genome |
76.5%
|
2019 |
Rossoni_dataset |
5572 |
None |
Contig |
14,288,869
|
6,472
|
37.99 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria Az2
G
P
F
|
GCA_006232395.1 |
ASM623239v1 |
Genome |
59.2%
|
2019 |
Rossoni_dataset |
Az2 |
None |
Contig |
14,055,766
|
6,305
|
40.1 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria MS1
G
P
F
|
GCA_006232515.1 |
ASM623251v1 |
Genome |
66.7%
|
2019 |
Rossoni_dataset |
MS1 |
None |
Contig |
14,906,717
|
7,441
|
37.62 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria MtSh
G
P
F
|
GCA_006232405.1 |
ASM623240v1 |
Genome |
65.9%
|
2019 |
Rossoni_dataset |
MtSh |
None |
Contig |
14,998,623
|
6,159
|
40.04 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria RT22
G
P
F
|
GCA_006232545.1 |
ASM623254v1 |
Genome |
75.3%
|
2019 |
Rossoni_dataset |
RT22 |
None |
Contig |
15,626,563
|
6,982
|
37.43 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria SAG21
G
P
F
|
GCA_006232365.1 |
ASM623236v1 |
Genome |
46.7%
|
2019 |
Rossoni_dataset |
SAG21 |
None |
Contig |
14,317,600
|
5,956
|
37.92 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Galdieria sulphuraria YNP5578.1
G
P
F
|
GCA_006232335.1 |
ASM623233v1 |
Genome |
73.4%
|
2019 |
Rossoni_dataset |
YNP5578.1 |
None |
Contig |
14,439,647
|
6,118
|
40.05 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber;
|
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
Data from: The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions;
|
eLife
DataDryad
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Cyanidiococcus yangmingshanensis 8.1.23 F7
G
|
GCA_026122185.1 |
ASM2612218v1 |
Genome |
66.7%
|
2022 |
NCBI |
8.1.23 F7 |
None |
Contig |
12,020,148
|
N/A
|
54.5 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Cyanidioschyzonales |
None |
Cyanidioschyzonaceae |
None |
Chung Hyun Cho, Seung In Park, Claudia Ciniglia, Eun Chan Yang, Louis Graf, Debashish Bhattacharya & Hwan Su Yoon;
Seung In Park, Chung Hyun Cho, Claudia Ciniglia, Tzu-Yen Huang, Shao-Lun Liu, Danilo E. Bustamante, Martha S. Calderon, Andres Mansilla, Timothy McDermott, Robert A. Andersen, Hwan Su Yoon;
Chung Hyun Cho, Seung In Park, Tzu-Yen Huang, Yongsung Lee, Claudia Ciniglia, Hari Chandana Yadavalli, Seong Wook Yang, Debashish Bhattacharya & Hwan Su Yoon;
|
Potential causes and consequences of rapid mitochondrial genome evolution in thermoacidophilic Galdieria (Rhodophyta);
Revised classification of the Cyanidiophyceae based on plastid genome data with descriptions of the Cavernulicolales ord. nov. and Galdieriales ord. nov. (Rhodophyta);
Genome-wide signatures of adaptation to extreme environments in red algae;
|
BMC Ecology and Evolution
Journal of Phycology
Nature Communications
|
S.-L. Liu, Y.-R. Chiang, H.S. Yoon & H.-Y. Fu 2020 |
S.-L. Liu, Y.R., Chiang, H.S. Yoon & H.-Y. Fu, 2020 |
|
|
Cyanidium caldarium DBV 063 E5
G
|
GCA_026184775.1 |
ASM2618477v1 |
Genome |
53.0%
|
2022 |
NCBI |
DBV 063 E5 |
None |
Contig |
8,787,356
|
N/A
|
65.5 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Cyanidiales |
None |
Cyanidioschyzonaceae |
None |
Chung Hyun Cho, Seung In Park, Claudia Ciniglia, Eun Chan Yang, Louis Graf, Debashish Bhattacharya & Hwan Su Yoon;
Seung In Park, Chung Hyun Cho, Claudia Ciniglia, Tzu-Yen Huang, Shao-Lun Liu, Danilo E. Bustamante, Martha S. Calderon, Andres Mansilla, Timothy McDermott, Robert A. Andersen, Hwan Su Yoon;
Chung Hyun Cho, Seung In Park, Tzu-Yen Huang, Yongsung Lee, Claudia Ciniglia, Hari Chandana Yadavalli, Seong Wook Yang, Debashish Bhattacharya & Hwan Su Yoon;
|
Potential causes and consequences of rapid mitochondrial genome evolution in thermoacidophilic Galdieria (Rhodophyta);
Revised classification of the Cyanidiophyceae based on plastid genome data with descriptions of the Cavernulicolales ord. nov. and Galdieriales ord. nov. (Rhodophyta);
Genome-wide signatures of adaptation to extreme environments in red algae;
|
BMC Ecology and Evolution
Journal of Phycology
Nature Communications
|
(Tilden) Geitler 1933 |
Geitler, 1933 |
|
|
Galdieria partita NRBC 102759
G
|
GCA_025991245.1 |
GpartN1_1.0 |
Genome |
76.1%
|
2022 |
NCBI |
NRBC 102759 |
None |
Contig |
17,969,193
|
N/A
|
37.5 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Shunsuke Hirooka, Takeshi Itabashi, Takako M. Ichinose, Ryo Onuma, Takayuki Fujiwara, Shota Yamashita, Lin Wei Jong, Reiko Tomita, Atsuko H. Iwane, and Shin-ya Miyagishima;
|
Life cycle and functional genomics of the unicellular red alga Galdieria for elucidating algal and plant evolution and industrial use;
|
PNAS
|
O.Yu. Sentsova, nom. inval. 1991 |
Merola, 1982 |
|
|
Galdieria yellowstonensis 108.79 E11
G
|
GCA_026122205.1 |
ASM2612220v1 |
Genome |
74.9%
|
2022 |
NCBI |
108.79 E11 |
Galdieria yellowstonensis |
Contig |
14,511,588
|
N/A
|
40.0 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
Chung Hyun Cho, Seung In Park, Claudia Ciniglia, Eun Chan Yang, Louis Graf, Debashish Bhattacharya & Hwan Su Yoon;
Seung In Park, Chung Hyun Cho, Claudia Ciniglia, Tzu-Yen Huang, Shao-Lun Liu, Danilo E. Bustamante, Martha S. Calderon, Andres Mansilla, Timothy McDermott, Robert A. Andersen, Hwan Su Yoon;
Chung Hyun Cho, Seung In Park, Tzu-Yen Huang, Yongsung Lee, Claudia Ciniglia, Hari Chandana Yadavalli, Seong Wook Yang, Debashish Bhattacharya & Hwan Su Yoon;
|
Potential causes and consequences of rapid mitochondrial genome evolution in thermoacidophilic Galdieria (Rhodophyta);
Revised classification of the Cyanidiophyceae based on plastid genome data with descriptions of the Cavernulicolales ord. nov. and Galdieriales ord. nov. (Rhodophyta);
Genome-wide signatures of adaptation to extreme environments in red algae;
|
BMC Ecology and Evolution
Journal of Phycology
Nature Communications
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Porolithon onkodes
G
|
GCA_029407785.1 |
PU_POon_v1 |
Genome |
70.2%
|
2023 |
NCBI |
PU_Poon_v1 |
None |
Scaffold |
224,708,768
|
N/A
|
46.0 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Corallinophycidae |
Corallinales |
None |
Porolithaceae |
None |
|
|
|
(Heydrich) Foslie 1909 |
Foslie, 1909 |
|
|
Rhodosorus marinus CCMP1338
G
|
GCA_029953675.1 |
rmar_v1 |
Genome |
N/A
|
2023 |
NCBI |
CCMP1338 |
None |
Contig |
31,189,410
|
N/A
|
49.0 |
Rhodophyta |
Proteorhodophytina |
Stylonematophyceae |
None |
Stylonematales |
None |
Stylonemataceae |
None |
|
|
|
Geitler 1930 |
Geitler, 1930 |
N/A
|
|
Galdieria sulphuraria NIES-3638
G
|
GCA_024341865.1 |
Gasu_v2 |
Genome |
74.9%
|
2022 |
NCBI |
NIES-3638 |
None |
Contig |
13,914,336
|
N/A
|
38.0 |
Rhodophyta |
Cyanidiophytina |
Cyanidiophyceae |
None |
Galdieriales |
None |
Galdieriaceae |
None |
|
|
|
(Galdieri) Merola 1982 |
Merola, 1982 |
|
|
Agarophyton chilense NLEC103-M9
G
|
GCA_030374765.1 |
ASM3037476v1 |
Genome |
76.5%
|
2023 |
NCBI |
NLEC103-M9 |
Gracilaria chilensis |
Contig |
79,767,677
|
N/A
|
49.0 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
|
|
|
C.J.Bird, McLachlan & E.C.Oliveira 1986 |
J.N. Norris & Fredericq, 2018 |
|
|
Gracilaria gracilis M1
G
|
GCA_030374805.1 |
ASM3037480v1 |
Genome |
74.5%
|
2023 |
NCBI |
M1 |
None |
Contig |
75,830,223
|
N/A
|
49.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
|
|
|
(Stackhouse) Steentoft, L.M.Irvine & Farnham 1995 |
Greville, 1830, nom. et typ. cons. |
|
|
Gracilaria caudata
G
|
GCA_030374735.1 |
ASM3037473v1 |
Genome |
71.8%
|
2023 |
NCBI |
176_S53 |
None |
Scaffold |
31,620,440
|
N/A
|
50.0 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gracilariales |
None |
Gracilariaceae |
Gracilarieae |
|
|
|
J.Agardh 1852 |
Greville, 1830, nom. et typ. cons. |
|
|
Microcladia borealis
G
|
GCA_032274145.1 |
ASM3227414v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL034 |
None |
Scaffold |
832,443,459
|
N/A
|
43.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Ceramiaceae |
Ceramieae |
|
|
|
Ruprecht 1850 |
Greville, 1830 |
N/A
|
|
Callophyllis flabellulata
G
|
GCA_032270525.1 |
ASM3227052v1 |
Genome |
3.5%
|
2023 |
NCBI |
IRGN 2022FHL093 |
None |
Scaffold |
88,600,207
|
N/A
|
45.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Kallymeniaceae |
None |
|
|
|
Harvey 1862 |
Kützing, 1843 |
|
|
Rhodymenia pacifica
G
|
GCA_032270325.1 |
ASM3227032v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL098 |
None |
Scaffold |
67,827,468
|
N/A
|
40.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Rhodymeniales |
None |
Rhodymeniaceae |
None |
|
|
|
Kylin 1931 |
Greville, 1830, nom. cons. |
|
|
Opuntiella californica
G
|
GCA_032270645.1 |
ASM3227064v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL017 |
None |
Scaffold |
28,870,885
|
N/A
|
39.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Furcellariaceae |
None |
|
|
|
(Farlow) Kylin 1925 |
Kylin, 1925 |
|
|
Mastocarpus papillatus
G
|
GCA_032356145.1 |
ASM3235614v1 |
Genome |
10.2%
|
2023 |
NCBI |
IRGN 2022FHL068 |
None |
Scaffold |
31,352,538
|
N/A
|
53.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Phyllophoraceae |
None |
|
|
|
(C.Agardh) Kützing 1843 |
Kützing, 1843 |
|
|
Odonthalia washingtoniensis
G
|
GCA_032358235.1 |
ASM3235823v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL027 |
None |
Scaffold |
298,484,751
|
N/A
|
40.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Rhodomelaceae |
None |
|
|
|
Kylin 1925 |
Lyngbye, 1819, nom. cons. |
N/A
|
|
Endocladia muricata
G
|
GCA_032356245.1 |
ASM3235624v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL059 |
None |
Scaffold |
203,941,595
|
N/A
|
49.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Endocladiaceae |
None |
|
|
|
(Endlicher) J.Agardh 1847 |
J. Agardh, 1841 |
N/A
|
|
Pterothamnion heteromorphum
G
|
GCA_032358295.1 |
ASM3235829v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL131 |
None |
Scaffold |
281,207,062
|
N/A
|
45.0 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Ceramiaceae |
Pterothamniaea |
|
|
|
(J.Agardh) Athanasiadis & Kraft 1994 |
Nägeli, 1855 |
N/A
|
|
Cumathamnion decipiens
G
|
GCA_032356425.1 |
ASM3235642v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL022 |
None |
Scaffold |
110,458,671
|
N/A
|
66.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Ceramiales |
None |
Delesseriaceae |
Delesserieae |
|
|
|
(J.Agardh) M.J.Wynne & G.W.Saunders 2012 |
M.J. Wynne & K. Daniels, 1966 |
|
|
Bonnemaisonia californica
G
|
GCA_032355485.1 |
ASM3235548v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN MTOF7NO01F |
None |
Scaffold |
247,554,455
|
N/A
|
44.0 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Bonnemaisoniales |
None |
Bonnemaisoniaceae |
None |
|
|
|
Buffham 1896 |
C.Agardh, 1822 |
N/A
|
|
Devaleraea mollis
G
|
GCA_032361265.1 |
ASM3236126v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL055 |
None |
Scaffold |
775,180,847
|
N/A
|
47.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Nemaliophycidae |
Palmariales |
None |
Palmariaceae |
None |
|
|
|
(Setchell & N.L.Gardner) G.W.Saunders, C.J.Jackson & Salomaki 2017 |
Guiry, 1982 |
N/A
|
|
Sarcodiotheca gaudichaudii
G
|
GCA_032355985.1 |
ASM3235598v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL060 |
None |
Scaffold |
124,335,700
|
N/A
|
40.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Solieriaceae |
None |
|
|
|
(Montagne) P.W.Gabrielson 1982 |
Kylin, 1932 |
N/A
|
|
Chondracanthus exasperatus
G
|
GCA_032358215.1 |
ASM3235821v1 |
Genome |
N/A
|
2023 |
NCBI |
IRGN 2022FHL095 |
None |
Scaffold |
32,689,163
|
N/A
|
41.5 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Gigartinaceae |
None |
|
|
|
(Harvey & Bailey) Hughey 1996 |
Kützing, 1843 |
|
|
Kappaphycus alvarezii kp
G
|
GCA_002205965.3 |
ASM220596v3 |
Genome |
59.2%
|
2020 |
NCBI |
kp |
None |
Contig |
336,052,185
|
21,442
|
45.36 |
Rhodophyta |
Eurhodophytina |
Florideophyceae |
Rhodymeniophycidae |
Gigartinales |
None |
Solieriaceae |
None |
Shangang Jia, Guoliang Wang, Guiming Liu, Jiangyong Qu, Beilun Zhao, Xinhao Jin, Lei Zhang, Jinlong Yin, Cui Liu, Guangle Shan, Shuangxiu Wu, Lipu Song, Tao Liu, Xumin Wang, Jun Yu;
|
High-quality de novo genome assembly of Kappaphycus alvarezii based on both PacBio and HiSeq sequencing;
|
bioRxiv
|
(Doty) L.M. Liao 1996 |
Doty, 1988 |
N/A
|